Package: spatialTIME 1.3.4-5

Fridley Lab

spatialTIME: Spatial Analysis of Vectra Immunoflourescent Data

Visualization and analysis of Vectra Immunoflourescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach presented by Wilson et al. <doi:10.1101/2021.04.27.21256104>.

Authors:Jordan Creed [aut], Ram Thapa [aut], Christopher Wilson [aut], Alex Soupir [aut], Oscar Ospina [aut], Julia Wrobel [aut], Brooke Fridley [cph], Fridley Lab [cre]

spatialTIME_1.3.4-5.tar.gz
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spatialTIME.pdf |spatialTIME.html
spatialTIME/json (API)

# Install 'spatialTIME' in R:
install.packages('spatialTIME', repos = c('https://fridleylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fridleylab/spatialtime/issues

Datasets:

On CRAN:

Conda:

6.08 score 4 stars 30 scripts 720 downloads 14 exports 64 dependencies

Last updated 8 months agofrom:391197e34d. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 12 2025
R-4.5-winOKMar 12 2025
R-4.5-macOKMar 12 2025
R-4.5-linuxOKMar 12 2025
R-4.4-winOKMar 12 2025
R-4.4-macOKMar 12 2025
R-4.4-linuxOKMar 12 2025
R-4.3-winOKMar 12 2025
R-4.3-macOKMar 12 2025

Exports:%>%bi_NN_Gbi_pair_correlationbi_ripleys_kbi_ripleys_k_WSIcreate_mifdixons_sinteraction_variablemerge_mifsNN_Gpair_correlationplot_immunofloripleys_ksubset_mif

Dependencies:abindclicodetoolscolorspacecpp11crayondeldirdigestdixondplyrfansifarverfurrrfuturegenericsggplot2globalsgluegoftestgtableisobandlabelinglatticelifecyclelistenvmagrittrMASSMatrixmgcvmunsellnlmeparallellypbmcapplypillarpkgconfigpolyclippurrrR6RColorBrewerrlangrpartscalesspspatstatspatstat.dataspatstat.explorespatstat.geomspatstat.linnetspatstat.modelspatstat.randomspatstat.sparsespatstat.univarspatstat.utilssplancsstringistringrtensortibbletidyrtidyselectutf8vctrsviridisLitewithr

Introduction to spatialTIME

Rendered fromintro.Rmdusingknitr::rmarkdownon Mar 12 2025.

Last update: 2024-05-28
Started: 2020-10-30